- Yan Xu*, Jun Ding, Ling-Yun Wu. iSulf-Cys: prediction of S-sulfenylation sites in proteins with physicochemical properties of amino acids. PloS One. 2016.11(4): e0154237. 2016. April..
- Yan Xu, Ya-Xin Ding, Jun Ding, Ling-Yun Wu, Yu Xue*. Mal-Lys: prediction of lysine malonylation sites in proteins integrated sequence-based features with mRMR feature selection. Scientific Reports. 2016.12.02, Vol6.38318..
- Yan Xu, Li Li, Jun Ding, Ling-Yun Wu, Guoqin Mai*, Fengfeng Zhou*. Gly-PseAAC: identifying protein lysine glycation through sequences. Gene. 2017 Feb.20.602:1-7..
- Li-Ming Liu, Yan Xu*, Kuo-Chen Chou. iPGK-PseAAC: identify lysine phosphoglycerylation sites in proteins by incorporating four different tiers of amino acid pairwise coupling information into the general PseAAC. Medicinal Chemistry. 2017, May.Vol 13(6), 552-559..
- Yan Xu, Zu Wang, Chunhui Li*, Kuo-Chen Chou. iPreny-PseAAC: Identify C-terminal Cysteine Prenylation Sites in Proteins by Incorporating Two Tiers of Sequence Couplings into PseAAC. Medicinal Chemistry. 2017, May.Vol.13(6), 544-551..
- Yingxi Yang, Hui Wang, Jun Ding, Yan Xu*. iAcet-Sumo: identification of lysine acetylation and sumoylation sites in proteins by multi-class transformation methods. Computers in Biology and Medicine. 2018, Sep.1 Vol.100:144-151..
- Xingyan Li，Weidong Li, Yan Xu*. Human Age Prediction Based on DNA Methylation Using a Gradient Boosting Regressor. Genes, 2018, (August. 21) Vol. 9. 424..
- Yan Xu, Yingxi Yang, Jun Ding, Chunhui Li*. iGlu-Lys: A Predictor for Lysine Glutarylation through Amino Acid Pair Order Features. IEEE Transactions on NanoBioscience. 2018, Oct. Vol.17(4):394-401..
- Yan Xu, Yingxi Yang, Zu Wang, Chunhui Li, Yuanhai Shao*. A systematic review on posttranslational modification in proteins: feature construction, algorithm and webserver. Protein and Peptide Letters. 2018, Dec. Vol. 25(9): 807-814..
- Meiqi Wu, Yingxi Yang, Hui Wang, Yan Xu*. A deep learning method to more accurately entall known lysine acetylation sites. BMC Bioinformatics. 2019, Jan. 23. Vol.20(1):49..